@string{AS =    {Annals of Statistics}}
@string{BI =    {Bioinformatics}}
@string{CancRes={Cancer Research}}
@string{ClinCh ={Clinical Chemistry}}
@string{PSB =   {Pacific Symposium on Biocomputing}}
@string{EMBOR = {EMBO Reports}}
@string{FEBSL=  {FEBS Letters}}
@string{GB =    {Genome Biology}}
@string{GR =    {Genome Research}}
@string{IJC =   {International Journal of Cancer}}
@string{JC =    {Journal of Classification}}
@string{JCB =   {Journal of Computational Biology}}
@string{JMVA =  {Journal of Multivariate Analysis}}
@string{JSPI =  {Journal of Statistical Planning and Inference}}
@string{JASA=   {Journal of the American Statistical Association}}
@string{JCGS=   {Journal of Computational and Graphical Statistics}}
@string{JRSSB=	{Journal of the Royal Statistical Society, Series B}}
@string{MBC =   {Molecular Biology of the Cell}}
@string{MC =    {Molecular Cell}}
@string{ML =    {Machine Learning}}
@string{NAR =   {Nucleic Acids Res}}
@string{NCB =   {Nature Cell Biology}}
@string{NBT =   {Nature Biotechnology}}
@string{NG  =   {Nature Genetics}}
@string{PRL =   {Physical Review Letters}}
@string{PSB =   {Pacific Symposium on Biocomputing}}
@string{PNAS =  {Proc. Natl. Acad. Sci.}}
@string{SAGMB = {Statistical Applications in Genetics and Molecular Biology}}
@string{SM =    {Statistics in Medicine}}
@string{SN =    {Social Networks}}



@article{Benjamini:1995,
  author =	 {Benjamini, Y. and Hochberg, Y.},
  year =	 {1995},
  title =	 {Controlling the false discovery rate: a practical and
                  powerful approach to multiple testing},
  journal =	 JRSSB,
  volume =	 {57},
  pages =	 {289--300}
}

@article{Benjamini:2001,
  author =	 {Benjamini, Y. and Yekutieli, D.},
  year =	 {2001},
  title =	 {The control of the false discovery rate in multiple
                  hypothesis testing under dependency},
  journal =	 AS,
  volume =	 {29},
  pages =	 {1165--88}
}


@article{Bolstadetal,
  author =	 {B. M. Bolstand and R. A. Irizarry and M. Astrand and others},
  title =	 {A comparison of normalization methods for high density
                  oligonucleotide array data based on variance and bias.},
  journal =	 BI,
  year =	 {2003},
  volume =	 {19},
  pages =	 {185--193},
}


@Article{Irizarry2003,
  author =	 {Rafael A. Irizarry and Bridget Hobbs and Francois Collin and
                  others},
  title =	 {Exploration, Normalization, and Summaries of High Density
                  Oligonucleotide Array Probe Level Data},
  journal =	 {Biostatistics},
  year =	 2003,
  pages =	 {249--64},
  volume =	 {4}
}

@Article{Irizarry:summary:2003,
  Author =	 "Irizarry, Rafael. A. and Bolstad, Benjamin. M. and Collin,
                  Francois. and others",
  Title =	 "{Summaries of Affymetrix GeneChip probe level data}",
  Journal =	 NAR,
  Year =	 "2003",
  Volume =	 "31",
  Pages =	 "e15",
  Month =	 "Feb"
}

@InCollection{IrizarryetalSpringer03,
  author =	 {R. Irizarry and L. Gautier and L. Cope},
  title =	 {An {R} Package for Analyses of {A}ffymetrix Oligonucleotide
                  Arrays},
  booktitle =	 {The Analysis of Gene Expression Data: Methods and Software},
  publisher =	 {Springer, New York},
  year =	 {2003},
  editor =	 {G. Parmigiani and E. S. Garrett and R. A. Irizarry and
                  S. L. Zeger},
}


@article{Smyth:2004,
  author =	 {G.K. Smyth},
  title =	 {Linear models and empirical {B}ayes methods for assessing
                  differential expression in microarray experiments},
  journal =	 SAGMB,
  year =	 2004,
  volume =	 3,
  pages =	 {Article 3}
}

@inproceedings{Smyth:2005,
  author =	 {Smyth, G. K.},
  title =	 {Individual channel analysis of two-colour microarrays},
  booktitle =	 {Bulletin of the International Statistical Institute, 58th
                  Session Proceedings Sydney 2005},
  publisher =	 {International Statistical Institute, Bruxelles},
  notes =	 {invited paper, 4 pages},
  year =	 {2005}
}

@article{Smyth:michaud:scott:2005,
  author =	 {Smyth, G. K. and Michaud, J. and Scott, H. },
  year =	 {2005},
  title =	 {The use of within-array replicate spots for assessing
                  differential expression in microarray experiments},
  journal =	 BI,
  volume =	 {21},
  pages =	 {to appear}
}

@article{Smyth:yang:speed:2003,
  Author =	 {Smyth, G. K. and Yang, Y. H. and Speed, T.},
  Title =	 {Statistical issues in {cDNA} microarray data analysis},
  Journal =	 {Methods in Molecular Biology},
  Volume =	 {224},
  Pages =	 {111-36},
  Year =	 {2003}
}

@article{Smyth:2003,
  Author =	 {Smyth, G. K. and Speed, T. P.},
  Title =	 {Normalization of {cDNA} microarray data},
  Journal =	 {Methods},
  Volume =	 {31},
  Pages =	 {265--273},
  Year =	 {2003}
}