makeAnnotations {ann.Dmelanogaster.FlyBase.r51} | R Documentation

## Function used to produce the annotation datasets provided by the ann.Dmelanogaster.FlyBase.r51 package

### Description

[TODO: Put a description]

### Usage

      makeAnnotations(srcdir=".", destdir=".")

### Arguments

`srcdir` | Path to the directory where the GFF files have been downloaded.
`destdir` | Path to the directory where to save the generated annotation datasets.

### Details

### Value

### Author(s)

H. Pages

### See Also

`getAnnGenes`, `getAnnExonParents`, `getAnnExons`, `EXON2GENE`, `GENE_ID2NAMES`, `GFFutils`

### Examples

      # Here is how the annotation datasets coming with the
      # ann.Dmelanogaster.FlyBase.r51 package were made:
      #
      #   1) From a Unix-shell, run the scripts provided in inst/scripts in
      #      a 'tmpdir':
      #        download-gff.sh && extract-gff.sh && clean-gff.sh && check-gff.sh
      #
      #   2) From R, call 'makeAnnotations(tmpdir)' where 'tmpdir' is the
      #      directory containing the "clean" GFF files produced at 1).

[Package ann.Dmelanogaster.FlyBase.r51 version 0.2.0 Index]