3eccb49f78327604c4113cf3553ae14c *DESCRIPTION
65f243ff18ddc457ccc5fd3d7e9753f5 *NAMESPACE
343ec6ed2c167ffb435d87dfd79dcdf0 *R/PMDviterbiSegmentation.R
2461d66b6a2e0140ebb87ff007836662 *R/calculateAlphaDistr.R
09c37119ef0a2065e740195dd67cf8af *R/calculateFDRs.R
577e93ced38d5a25ee878c1206dd2a4e *R/createGRangesObjectPMDSegmentation.R
dc3b8a16902e4660328b028d1783ef7e *R/plotAlphaDistributionOneChr.R
2e88048878c421f537ef623b2a37a0c6 *R/plotFinalSegmentation.R
aa84751bea58ba0de4cc0b8e23e8d90d *R/plotPMDSegmentation.R
a8225d4fb936a29d6e01614652bf3bdf *R/readMethylome.R
f78a0763d690cc6dc21f9523788f0ed3 *R/readSNPTable.R
ecedb7129aef7bd64e6f9caf34583f54 *R/removeSNPs.R
292348b34084b3cdafd1ccaa47221d4c *R/savePMDSegments.R
7eef34482a2908413ad0f0f200347538 *R/saveUMRLMRSegments.R
2cba76cef11afac96acdde28c7efed9d *R/segmentPMDs.R
78c459129523d7e8854a76ad926d4570 *R/segmentUMRsLMRs.R
c6d541a50017370fe062b2294a73d37b *R/trainPMDHMM.R
ff0806b43d5e9d2df24d77cbf7897e76 *build/vignette.rds
f7c7f4bcccf5c998208dc8b1baa446e7 *inst/CITATION
95e6af589e90e43dcdf71ba8fb8c61e6 *inst/doc/MethylSeekR.R
0e2fb8a4a39df9312217eaf7a9d045c3 *inst/doc/MethylSeekR.Rnw
e8259dbdbcb413e39db52b63e66a04ae *inst/doc/MethylSeekR.pdf
71d605269bc2bda5fbc86296f8640016 *inst/extdata/Lister2009_imr90_hg38_chr22.tab
69cc79636c320e66d1eae490a2a66dc8 *inst/extdata/SNVs_hg38_chr22.tab
ab402fe51798021a1ce8f071fe8fa76a *man/MethylSeekR-package.Rd
f590eabafc65dc5e27cb3831ea433770 *man/calculateFDRs.Rd
6c2d45fe578aa6a9787cb615a5abc085 *man/plotAlphaDistributionOneChr.Rd
36015810de71258b3050e8b74c35dd25 *man/plotFinalSegmentation.Rd
b87cc9656c8ec674a90a2d63948fcccc *man/plotPMDSegmentation.Rd
8ae9060ec9fb1b5c612411a4193d2b76 *man/readMethylome.Rd
74e6c8e2ad4a231e82e05413b67c0840 *man/readSNPTable.Rd
ffc940695e4359fc21db4433d2a283a3 *man/removeSNPs.Rd
20daf0a1469e0281fdbffe42571100c3 *man/savePMDSegments.Rd
4433caffc8718fcf75a637af2ba7d3c8 *man/saveUMRLMRSegments.Rd
30f31c9b3e65eb95910283920e3630dd *man/segmentPMDs.Rd
beba3662dc4a994f109200303ce48fcf *man/segmentUMRsLMRs.Rd
0e2fb8a4a39df9312217eaf7a9d045c3 *vignettes/MethylSeekR.Rnw
576f64dab1841f976276368143241c0f *vignettes/refs.bib
