| align_to_range | align_to_range |
| BuildTree | BuildTree |
| cellsinfo | example of cellsinfo |
| celltype | example of celltype |
| change_form_stat | change_form_stat |
| cutsite | example of cutsite |
| data | example of data |
| example_data | example_data |
| FindIndel | FindIndel |
| IndelForm | IndelForm |
| IndelIdents | IndelIdents |
| IndelPlot | IndelPlot |
| PlotTree | PlotTree |
| ReadCutsite | ReadCutsite |
| ReadFasta | ReadFasta |
| ref | example of ref |
| scarform | example of scarform |
| scarinfo | example of scarinfo |
| scarref | example of scarref |
| scarref_all | example of scarref_all |
| tag | example of tag |
| TagDist | TagDist |
| TagProcess | TagProcess |
| treeinfo | example of treeinfo |