MatrixGenerics
This is the development version of MatrixGenerics; for the stable release version, see MatrixGenerics.
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Bioconductor version: Development (3.21)
S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.
Author: Constantin Ahlmann-Eltze [aut] (ORCID:
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("MatrixGenerics")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MatrixGenerics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | Artistic-2.0 |
| Depends | matrixStats (>= 1.4.1) |
| Imports | methods |
| System Requirements | |
| URL | https://bioconductor.org/packages/MatrixGenerics |
| Bug Reports | https://github.com/Bioconductor/MatrixGenerics/issues |
See More
| Suggests | Matrix, sparseMatrixStats, SparseArray, DelayedArray, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0) |
| Linking To | |
| Enhances | |
| Depends On Me | DelayedArray, DelayedMatrixStats, GenomicFiles, SparseArray, sparseMatrixStats, SummarizedExperiment, VariantAnnotation |
| Imports Me | atena, CoreGx, crisprDesign, CTexploreR, demuxSNP, DESeq2, dreamlet, escape, FLAMES, genefilter, glmGamPoi, imcRtools, lemur, lineagespot, mia, miaSim, miloR, MinimumDistance, PDATK, RaggedExperiment, RAIDS, RCSL, scater, scFeatures, scone, scPCA, scran, scuttle, scviR, shinyMethyl, spatzie, StabMap, tadar, TENxIO, tLOH, tpSVG, transformGamPoi, universalmotif, VanillaICE, homosapienDEE2CellScore, SCIntRuler |
| Suggests Me | bnem, cypress, MungeSumstats, scrapper |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MatrixGenerics_1.19.0.tar.gz |
| Windows Binary (x86_64) | MatrixGenerics_1.19.0.zip (64-bit only) |
| macOS Binary (x86_64) | MatrixGenerics_1.19.0.tgz |
| macOS Binary (arm64) | MatrixGenerics_1.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MatrixGenerics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MatrixGenerics |
| Bioc Package Browser | https://code.bioconductor.org/browse/MatrixGenerics/ |
| Package Short Url | https://bioconductor.org/packages/MatrixGenerics/ |
| Package Downloads Report | Download Stats |