MouseFM
This is the development version of MouseFM; for the stable release version, see MouseFM.
In-silico methods for genetic finemapping in inbred mice
Bioconductor version: Development (3.21)
This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).
Author: Matthias Munz [aut, cre] (ORCID:
Maintainer: Matthias Munz <matthias.munz at gmx.de>
citation("MouseFM")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MouseFM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MouseFM")| Fetch | HTML | R Script |
| Finemapping | HTML | R Script |
| Prioritization | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation |
| Version | 1.17.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0) |
| Imports | httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/matmu/MouseFM/issues |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MouseFM_1.17.0.tar.gz |
| Windows Binary (x86_64) | MouseFM_1.17.0.zip |
| macOS Binary (x86_64) | MouseFM_1.17.0.tgz |
| macOS Binary (arm64) | MouseFM_1.17.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MouseFM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MouseFM |
| Bioc Package Browser | https://code.bioconductor.org/browse/MouseFM/ |
| Package Short Url | https://bioconductor.org/packages/MouseFM/ |
| Package Downloads Report | Download Stats |