gDRcore

This is the development version of gDRcore; for the stable release version, see gDRcore.

Processing functions and interface to process and analyze drug dose-response data

Bioconductor version: Development (3.21)

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Author: Bartosz Czech [aut] (ORCID: ), Arkadiusz Gladki [cre, aut] (ORCID: ), Marc Hafner [aut] (ORCID: ), Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Marcin Kamianowski [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRcore")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRcore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ShinyApps, Software
Version	1.5.2
In Bioconductor since	BioC 3.18 (R-4.3) (1 year)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils(>= 1.3.9), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table
System Requirements
URL	https://github.com/gdrplatform/gDRcore https://gdrplatform.github.io/gDRcore/
Bug Reports	https://github.com/gdrplatform/gDRcore/issues

Suggests	BiocStyle, gDRstyle(>= 1.1.5), gDRimport(>= 1.1.9), gDRtestData(>= 1.1.10), IRanges, knitr, pkgbuild, qs, testthat, yaml
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gDRcore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDRcore
Package Short Url	https://bioconductor.org/packages/gDRcore/
Package Downloads Report	Download Stats