iGC

This is the development version of iGC; for the stable release version, see iGC.

An integrated analysis package of Gene expression and Copy number alteration

Bioconductor version: Development (3.21)

This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.

Author: Yi-Pin Lai [aut], Liang-Bo Wang [aut, cre], Tzu-Pin Lu [aut], Eric Y. Chuang [aut]

Maintainer: Liang-Bo Wang <r02945054 at ntu.edu.tw>

Citation (from within R, enter citation("iGC")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iGC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iGC")

Introduction to iGC	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AssayDomain, Biological Question, CopyNumberVariation, DifferentialExpression, GeneExpression, Genetics, GenomicVariation, Microarray, MultipleComparison, ResearchField, Sequencing, Software, Technology, WorkflowStep
Version	1.37.0
In Bioconductor since	BioC 3.2 (R-3.2) (9 years)
License	GPL-2
Depends	R (>= 3.2.0)
Imports	plyr, data.table
System Requirements
URL	http://github.com/ccwang002/iGC
Bug Reports	http://github.com/ccwang002/iGC/issues

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances	doMC
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iGC_1.37.0.tar.gz
Windows Binary (x86_64)	iGC_1.37.0.zip (64-bit only)
macOS Binary (x86_64)	iGC_1.37.0.tgz
macOS Binary (arm64)	iGC_1.37.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iGC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iGC
Bioc Package Browser	https://code.bioconductor.org/browse/iGC/
Package Short Url	https://bioconductor.org/packages/iGC/
Package Downloads Report	Download Stats