igblastr
This is the development version of igblastr; to use it, please install the devel version of Bioconductor.
User-friendly R Wrapper to IgBLAST
Bioconductor version: Development (3.22)
The igblastr package provides functions to conveniently install and use a local IgBLAST installation from within R. IgBLAST is described at
Author: Hervé Pagès [aut, cre]
, Ollivier Hyrien [aut, fnd]
, Kellie MacPhee [ctb]
, Michael Duff [ctb]
, Jason Taylor [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("igblastr")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("igblastr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("igblastr")| igblastr overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | CellBiology, ImmunoOncology, Immunogenetics, Immunology, Software |
| Version | 0.99.7 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0), tibble, Biostrings |
| Imports | methods, utils, stats, tools, R.utils, curl, httr, xml2, rvest, xtable, jsonlite, S4Vectors, IRanges, GenomeInfoDb |
| System Requirements | Perl (for install_IMGT_germline_db() only) |
| URL | https://bioconductor.org/packages/igblastr |
| Bug Reports | https://github.com/HyrienLab/igblastr/issues |
See More
| Suggests | parallel, testthat, knitr, rmarkdown, BiocStyle, ggplot2, dplyr, scales, ggseqlogo |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | igblastr_0.99.7.tar.gz |
| Windows Binary (x86_64) | igblastr_0.99.7.zip |
| macOS Binary (x86_64) | igblastr_0.99.7.tgz |
| macOS Binary (arm64) | igblastr_0.99.7.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/igblastr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/igblastr |
| Bioc Package Browser | https://code.bioconductor.org/browse/igblastr/ |
| Package Short Url | https://bioconductor.org/packages/igblastr/ |
| Package Downloads Report | Download Stats |