moanin
This is the development version of moanin; for the stable release version, see moanin.
An R Package for Time Course RNASeq Data Analysis
Bioconductor version: Development (3.21)
Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.
Author: Elizabeth Purdom [aut] (ORCID:
Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>
citation("moanin")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("moanin")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("moanin")| The Moanin Package | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| LICENSE | Text |
Details
| biocViews | Clustering, DifferentialExpression, GeneExpression, Microarray, RNASeq, Software, TimeCourse |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | BSD 3-clause License + file LICENSE |
| Depends | R (>= 4.0), SummarizedExperiment, topGO, stats |
| Imports | S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics, methods, grDevices, reshape2, NMI, zoo, ClusterR, splines, matrixStats |
| System Requirements | |
| URL |
See More
| Suggests | testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, markdown, covr, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | moanin_1.15.0.tar.gz |
| Windows Binary (x86_64) | moanin_1.15.0.zip (64-bit only) |
| macOS Binary (x86_64) | moanin_1.15.0.tgz |
| macOS Binary (arm64) | moanin_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/moanin |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/moanin |
| Bioc Package Browser | https://code.bioconductor.org/browse/moanin/ |
| Package Short Url | https://bioconductor.org/packages/moanin/ |
| Package Downloads Report | Download Stats |