randRotation
This is the development version of randRotation; for the stable release version, see randRotation.
Random Rotation Methods for High Dimensional Data with Batch Structure
Bioconductor version: Development (3.21)
A collection of methods for performing random rotations on high-dimensional, normally distributed data (e.g. microarray or RNA-seq data) with batch structure. The random rotation approach allows exact testing of dependent test statistics with linear models following arbitrary batch effect correction methods.
Author: Peter Hettegger [aut, cre] (ORCID:
Maintainer: Peter Hettegger <p.hettegger at gmail.com>
citation("randRotation")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("randRotation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("randRotation")| Random Rotation Package Introduction | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, BiomedicalInformatics, DifferentialExpression, GeneExpression, Genetics, MicroRNAArray, Microarray, Normalization, Preprocessing, RNASeq, Sequencing, Software, StatisticalMethod |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, graphics, utils, stats, Rdpack (>= 0.7) |
| System Requirements | |
| URL | https://github.com/phettegger/randRotation |
| Bug Reports | https://github.com/phettegger/randRotation/issues |
See More
| Suggests | knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle, testthat (>= 2.1.0), limma, sva |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | randRotation_1.19.0.tar.gz |
| Windows Binary (x86_64) | randRotation_1.19.0.zip (64-bit only) |
| macOS Binary (x86_64) | randRotation_1.19.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/randRotation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/randRotation |
| Bioc Package Browser | https://code.bioconductor.org/browse/randRotation/ |
| Package Short Url | https://bioconductor.org/packages/randRotation/ |
| Package Downloads Report | Download Stats |