riboSeqR
This is the development version of riboSeqR; for the stable release version, see riboSeqR.
Analysis of sequencing data from ribosome profiling experiments
Bioconductor version: Development (3.21)
Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.
Author: Thomas J. Hardcastle [aut], Samuel Granjeaud [cre] (ORCID:
Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>
citation("riboSeqR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("riboSeqR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("riboSeqR")| riboSeqR | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, RiboSeq, Sequencing, Software, Visualization |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.2), methods, GenomicRanges, abind |
| Imports | Rsamtools, IRanges, S4Vectors, baySeq, GenomeInfoDb, seqLogo |
| System Requirements | |
| URL | https://github.com/samgg/riboSeqR |
| Bug Reports | https://github.com/samgg/riboSeqR/issues |
See More
| Suggests | BiocStyle, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | riboSeqR_1.41.0.tar.gz |
| Windows Binary (x86_64) | riboSeqR_1.41.0.zip (64-bit only) |
| macOS Binary (x86_64) | riboSeqR_1.41.0.tgz |
| macOS Binary (arm64) | riboSeqR_1.41.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/riboSeqR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/riboSeqR |
| Bioc Package Browser | https://code.bioconductor.org/browse/riboSeqR/ |
| Package Short Url | https://bioconductor.org/packages/riboSeqR/ |
| Package Downloads Report | Download Stats |