tenXplore
This is the development version of tenXplore; for the stable release version, see tenXplore.
ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics
Bioconductor version: Development (3.21)
Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.
Author: Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("tenXplore")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tenXplore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tenXplore")| tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons | HTML | R Script |
| Reference Manual |
Details
| biocViews | DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics |
| Version | 1.29.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0), shiny |
| Imports | methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils, BiocFileCache |
| System Requirements | |
| URL |
See More
| Suggests | org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tenXplore_1.29.0.tar.gz |
| Windows Binary (x86_64) | tenXplore_1.29.0.zip (64-bit only) |
| macOS Binary (x86_64) | tenXplore_1.29.0.tgz |
| macOS Binary (arm64) | tenXplore_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tenXplore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tenXplore |
| Bioc Package Browser | https://code.bioconductor.org/browse/tenXplore/ |
| Package Short Url | https://bioconductor.org/packages/tenXplore/ |
| Package Downloads Report | Download Stats |