GSCA: Gene Set Context Analysis

---

Documentation for package ‘GSCA’ version 2.38.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

GSCA-package	GSCA: Gene Set Context Analysis
annotatePeaks	Annotate ChIPx peaks with genes by Entrez GeneIDs
ConstructTG	Construct target genes for a TF using TF-bound genes and differentially expressed genes from ChIP-chip or ChIP-seq and TF perturbation gene expression data.
geneIDdata	Homologene data
GSCA	GSCA
GSCAeda	GSCA follow-up exploratory data analysis
GSCAplot	Visualize GSCA output
GSCAui	Launch GSCA interactive User Interface
Oct4ESC_TG	Oct4 activated (+) and repressed (-) target genes in embryonic stem cells
STAT1_TG	STAT1 activated (+) target genes defined from experimental ChIP-seq data and literature survey.
tabSearch	Searches through GPL96, GPL1261, GPL570 or GPL571 compendium data for biological contexts of interest.