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ANF

Affinity Network Fusion for Complex Patient Clustering


Bioconductor version: Release (3.20)

This package is used for complex patient clustering by integrating multi-omic data through affinity network fusion.

Author: Tianle Ma, Aidong Zhang

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("ANF")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ANF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ANF")
Cancer Patient Clustering with ANF HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, GraphAndNetwork, Network, Software
Version 1.28.0
In Bioconductor since BioC 3.6 (R-3.4) (7 years)
License GPL-3
Depends
Imports igraph, Biobase, survival, MASS, stats, RColorBrewer
System Requirements
URL
See More
Suggests ExperimentHub, SNFtool, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me HarmonizedTCGAData
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ANF_1.28.0.tar.gz
Windows Binary (x86_64) ANF_1.28.0.zip
macOS Binary (x86_64) ANF_1.28.0.tgz
macOS Binary (arm64) ANF_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ANF
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ANF
Bioc Package Browser https://code.bioconductor.org/browse/ANF/
Package Short Url https://bioconductor.org/packages/ANF/
Package Downloads Report Download Stats