AnnotationFilter

Facilities for Filtering Bioconductor Annotation Resources

Bioconductor version: Release (3.20)

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationFilter")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnnotationFilter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationFilter")

Facilities for Filtering Bioconductor Annotation resources	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, Infrastructure, Software
Version	1.30.0
In Bioconductor since	BioC 3.5 (R-3.4) (7.5 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	utils, methods, GenomicRanges, lazyeval
System Requirements
URL	https://github.com/Bioconductor/AnnotationFilter
Bug Reports	https://github.com/Bioconductor/AnnotationFilter/issues

Suggests	BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown
Linking To
Enhances
Depends On Me	chimeraviz, CompoundDb, ensembldb, Organism.dplyr
Imports Me	biovizBase, BUSpaRse, CleanUpRNAseq, drugTargetInteractions, ggbio, QFeatures, RAIDS, RITAN, scanMiRApp, TVTB, GenomicDistributionsData, locuszoomr, RNAseqQC
Suggests Me	GenomicDistributions, GenomicFeatures, TFutils, wiggleplotr
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnnotationFilter_1.30.0.tar.gz
Windows Binary (x86_64)	AnnotationFilter_1.30.0.zip
macOS Binary (x86_64)	AnnotationFilter_1.30.0.tgz
macOS Binary (arm64)	AnnotationFilter_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnnotationFilter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnnotationFilter
Bioc Package Browser	https://code.bioconductor.org/browse/AnnotationFilter/
Package Short Url	https://bioconductor.org/packages/AnnotationFilter/
Package Downloads Report	Download Stats