DEFormats

Differential gene expression data formats converter

Bioconductor version: Release (3.20)

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("DEFormats")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")

Differential gene expression data formats converter	HTML	R Script
Reference Manual	PDF
NEWS	Text

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version	1.34.0
In Bioconductor since	BioC 3.3 (R-3.3) (8.5 years)
License	GPL-3
Depends
Imports	checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
System Requirements
URL	https://github.com/aoles/DEFormats
Bug Reports	https://github.com/aoles/DEFormats/issues

Suggests	BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me	regionReport
Suggests Me	ideal
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	DEFormats_1.34.0.tar.gz
Windows Binary (x86_64)	DEFormats_1.34.0.zip (64-bit only)
macOS Binary (x86_64)	DEFormats_1.34.0.tgz
macOS Binary (arm64)	DEFormats_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DEFormats
Bioc Package Browser	https://code.bioconductor.org/browse/DEFormats/
Package Short Url	https://bioconductor.org/packages/DEFormats/
Package Downloads Report	Download Stats