DELocal
Identifies differentially expressed genes with respect to other local genes
Bioconductor version: Release (3.20)
The goal of DELocal is to identify DE genes compared to their neighboring genes from the same chromosomal location. It has been shown that genes of related functions are generally very far from each other in the chromosome. DELocal utilzes this information to identify DE genes comparing with their neighbouring genes.
Author: Rishi Das Roy [aut, cre] 
Maintainer: Rishi Das Roy <rishi.dasroy at gmail.com>
citation("DELocal")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DELocal")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DELocal")| DELocal | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | DESeq2, dplyr, reshape2, limma, SummarizedExperiment, ggplot2, matrixStats, stats |
| System Requirements | |
| URL | https://github.com/dasroy/DELocal |
| Bug Reports | https://github.com/dasroy/DELocal/issues |
See More
| Suggests | biomaRt, knitr, rmarkdown, stringr, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | broadSeq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DELocal_1.6.0.tar.gz |
| Windows Binary (x86_64) | DELocal_1.6.0.zip (64-bit only) |
| macOS Binary (x86_64) | DELocal_1.6.0.tgz |
| macOS Binary (arm64) | DELocal_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DELocal |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DELocal |
| Bioc Package Browser | https://code.bioconductor.org/browse/DELocal/ |
| Package Short Url | https://bioconductor.org/packages/DELocal/ |
| Package Downloads Report | Download Stats |