HTSFilter
Filter replicated high-throughput transcriptome sequencing data
Bioconductor version: Release (3.20)
This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.
Author: Andrea Rau [cre, aut] 
, Melina Gallopin [ctb], Gilles Celeux [ctb], Florence Jaffrézic [ctb]
Maintainer: Andrea Rau <andrea.rau at inrae.fr>
citation("HTSFilter")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HTSFilter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HTSFilter")| HTSFilter | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, Preprocessing, RNASeq, Sequencing, Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0) |
| Imports | edgeR, DESeq2, BiocParallel, Biobase, utils, stats, grDevices, graphics, methods |
| System Requirements | |
| URL |
See More
| Suggests | EDASeq, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | coseq |
| Suggests Me | HTSCluster |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HTSFilter_1.46.0.tar.gz |
| Windows Binary (x86_64) | HTSFilter_1.46.0.zip |
| macOS Binary (x86_64) | HTSFilter_1.46.0.tgz |
| macOS Binary (arm64) | HTSFilter_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HTSFilter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HTSFilter |
| Bioc Package Browser | https://code.bioconductor.org/browse/HTSFilter/ |
| Package Short Url | https://bioconductor.org/packages/HTSFilter/ |
| Package Downloads Report | Download Stats |