IsoCorrectoR
Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
Bioconductor version: Release (3.20)
IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as ultra-high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR. NOTE: With R version 4.0.0, writing correction results to Excel files may currently not work on Windows. However, writing results to csv works as before.
Author: Christian Kohler [cre, aut], Paul Heinrich [aut]
Maintainer: Christian Kohler <christian.kohler at ur.de>
citation("IsoCorrectoR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IsoCorrectoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IsoCorrectoR")| IsoCorrectoR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Preprocessing, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.5) |
| Imports | dplyr, magrittr, methods, quadprog, readr, readxl, stringr, tibble, tools, utils, pracma, WriteXLS |
| System Requirements | |
| URL | https://genomics.ur.de/files/IsoCorrectoR/ |
See More
| Suggests | IsoCorrectoRGUI, knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | IsoCorrectoRGUI |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IsoCorrectoR_1.24.0.tar.gz |
| Windows Binary (x86_64) | IsoCorrectoR_1.24.0.zip (64-bit only) |
| macOS Binary (x86_64) | IsoCorrectoR_1.24.0.tgz |
| macOS Binary (arm64) | IsoCorrectoR_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IsoCorrectoR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IsoCorrectoR |
| Bioc Package Browser | https://code.bioconductor.org/browse/IsoCorrectoR/ |
| Package Short Url | https://bioconductor.org/packages/IsoCorrectoR/ |
| Package Downloads Report | Download Stats |