MultimodalExperiment

Integrative Bulk and Single-Cell Experiment Container

Bioconductor version: Release (3.20)

MultimodalExperiment is an S4 class that integrates bulk and single-cell experiment data; it is optimally storage-efficient, and its methods are exceptionally fast. It effortlessly represents multimodal data of any nature and features normalized experiment, subject, sample, and cell annotations, which are related to underlying biological experiments through maps. Its coordination methods are opt-in and employ database-like join operations internally to deliver fast and flexible management of multimodal data.

Author: Lucas Schiffer [aut, cre]

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("MultimodalExperiment")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultimodalExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultimodalExperiment")

MultimodalExperiment	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, Infrastructure, SingleCell, Software
Version	1.6.0
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	Artistic-2.0
Depends	R (>= 4.3.0), IRanges, S4Vectors
Imports	BiocGenerics, MultiAssayExperiment, methods, utils
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MultimodalExperiment_1.6.0.tar.gz
Windows Binary (x86_64)	MultimodalExperiment_1.6.0.zip
macOS Binary (x86_64)	MultimodalExperiment_1.6.0.tgz
macOS Binary (arm64)	MultimodalExperiment_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MultimodalExperiment
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MultimodalExperiment
Bioc Package Browser	https://code.bioconductor.org/browse/MultimodalExperiment/
Package Short Url	https://bioconductor.org/packages/MultimodalExperiment/
Package Downloads Report	Download Stats