ResidualMatrix

Creating a DelayedMatrix of Regression Residuals

Bioconductor version: Release (3.20)

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ResidualMatrix")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ResidualMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ResidualMatrix")

Using the ResidualMatrix	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software
Version	1.16.0
In Bioconductor since	BioC 3.12 (R-4.0) (4 years)
License	GPL-3
Depends
Imports	methods, Matrix, S4Vectors, DelayedArray
System Requirements
URL	https://github.com/LTLA/ResidualMatrix
Bug Reports	https://github.com/LTLA/ResidualMatrix/issues

Suggests	testthat, BiocStyle, knitr, rmarkdown, BiocSingular
Linking To
Enhances
Depends On Me
Imports Me	batchelor
Suggests Me	alabaster.matrix, BiocSingular, chihaya, scran
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ResidualMatrix_1.16.0.tar.gz
Windows Binary (x86_64)	ResidualMatrix_1.16.0.zip
macOS Binary (x86_64)	ResidualMatrix_1.16.0.tgz
macOS Binary (arm64)	ResidualMatrix_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ResidualMatrix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ResidualMatrix
Bioc Package Browser	https://code.bioconductor.org/browse/ResidualMatrix/
Package Short Url	https://bioconductor.org/packages/ResidualMatrix/
Package Downloads Report	Download Stats