SQLDataFrame

Representation of SQL tables in DataFrame metaphor


Bioconductor version: Release (3.19)

Implements bindings for SQL tables that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows SQL-derived data to be easily used inside other Bioconductor objects (e.g., SummarizedExperiments) while keeping everything on disk.

Author: Qian Liu [aut, cre] , Aaron Lun [aut], Martin Morgan [aut]

Maintainer: Qian Liu <Qian.Liu at RoswellPark.org>

Citation (from within R, enter citation("SQLDataFrame")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SQLDataFrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SQLDataFrame")
User guide HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.18.0
In Bioconductor since BioC 3.10 (R-3.6) (5 years)
License LGPL (>= 3); File LICENSE
Depends DelayedArray, S4Vectors
Imports stats, utils, methods, BiocGenerics, RSQLite, duckdb, DBI
System Requirements
URL https://github.com/Bioconductor/SQLDataFrame
Bug Reports https://github.com/Bioconductor/SQLDataFrame/issues
See More
Suggests knitr, rmarkdown, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SQLDataFrame_1.18.0.tar.gz
Windows Binary SQLDataFrame_1.18.0.zip
macOS Binary (x86_64) SQLDataFrame_1.18.0.tgz
macOS Binary (arm64) SQLDataFrame_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SQLDataFrame
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SQLDataFrame
Bioc Package Browser https://code.bioconductor.org/browse/SQLDataFrame/
Package Short Url https://bioconductor.org/packages/SQLDataFrame/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.19 Source Archive