ibh

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Release (3.20)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("ibh")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ibh")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ibh")

ibh	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version	1.54.0
In Bioconductor since	BioC 2.8 (R-2.13) (13.5 years)
License	GPL (>= 2)
Depends	simpIntLists
Imports
System Requirements
URL

Suggests	yeastCC, stats
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ibh_1.54.0.tar.gz
Windows Binary (x86_64)	ibh_1.54.0.zip
macOS Binary (x86_64)	ibh_1.54.0.tgz
macOS Binary (arm64)	ibh_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ibh
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ibh
Bioc Package Browser	https://code.bioconductor.org/browse/ibh/
Package Short Url	https://bioconductor.org/packages/ibh/
Package Downloads Report	Download Stats