plyxp

Data masks for SummarizedExperiment enabling dplyr-like manipulation

Bioconductor version: Release (3.20)

The package provides `rlang` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for `plyxp` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame.

Author: Justin Landis [aut, cre] , Michael Love [aut]

Maintainer: Justin Landis <jtlandis314 at gmail.com>

Citation (from within R, enter citation("plyxp")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plyxp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plyxp")

plyxp Usage Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, GenomeAnnotation, Software, Transcriptomics
Version	1.0.0
In Bioconductor since	BioC 3.20 (R-4.4) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 4.4.0)
Imports	dplyr, purrr, rlang, SummarizedExperiment, tidyr, tidyselect, vctrs, tibble, pillar, cli, glue, S7, S4Vectors, utils, methods
System Requirements
URL	https://github.com/jtlandis/plyxp https://jtlandis.github.io/plyxp
Bug Reports	https://www.github.com/jtlandis/plyxp/issues

Suggests	devtools, knitr, rmarkdown, testthat, airway, IRanges, here
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plyxp_1.0.0.tar.gz
Windows Binary (x86_64)	plyxp_1.0.0.zip
macOS Binary (x86_64)	plyxp_1.0.0.tgz
macOS Binary (arm64)	plyxp_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plyxp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plyxp
Bioc Package Browser	https://code.bioconductor.org/browse/plyxp/
Package Short Url	https://bioconductor.org/packages/plyxp/
Package Downloads Report	Download Stats