rhdf5
R Interface to HDF5
Bioconductor version: Release (3.20)
This package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.
Author: Bernd Fischer [aut], Mike Smith [aut, cre] , Gregoire Pau [aut], Martin Morgan [ctb], Daniel van Twisk [ctb]
Maintainer: Mike Smith <mike.smith at embl.de>
citation("rhdf5")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rhdf5")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rhdf5")
Reading HDF5 Files In The Cloud | HTML | R Script |
rhdf5 - HDF5 interface for R | HTML | R Script |
rhdf5 Practical Tips | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Infrastructure, Software |
Version | 2.50.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0.0), methods |
Imports | Rhdf5lib(>= 1.13.4), rhdf5filters(>= 1.15.5) |
System Requirements | GNU make |
URL | https://github.com/grimbough/rhdf5 |
Bug Reports | https://github.com/grimbough/rhdf5/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rhdf5_2.50.0.tar.gz |
Windows Binary (x86_64) | rhdf5_2.50.0.zip |
macOS Binary (x86_64) | rhdf5_2.50.0.tgz |
macOS Binary (arm64) | rhdf5_2.50.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rhdf5 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rhdf5 |
Bioc Package Browser | https://code.bioconductor.org/browse/rhdf5/ |
Package Short Url | https://bioconductor.org/packages/rhdf5/ |
Package Downloads Report | Download Stats |