QTLExperiment
This is the development version of QTLExperiment; for the stable release version, see QTLExperiment.
S4 classes for QTL summary statistics and metadata
Bioconductor version: Development (3.21)
QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.
Author: Christina Del Azodi [aut], Davis McCarthy [ctb], Amelia Dunstone [cre, ctb] (ORCID:
Maintainer: Amelia Dunstone <amelia.dunstone at svi.edu.au>
citation("QTLExperiment")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("QTLExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("QTLExperiment")| An introduction to the QTLExperiment class | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, FunctionalGenomics, Infrastructure, SNP, Sequencing, Software |
| Version | 1.5.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | GPL-3 |
| Depends | SummarizedExperiment |
| Imports | methods, rlang, checkmate, dplyr, collapse, vroom, tidyr, tibble, utils, stats, ashr, S4Vectors, BiocGenerics |
| System Requirements | |
| URL | https://github.com/dunstone-a/QTLExperiment |
| Bug Reports | https://github.com/dunstone-a/QTLExperiment/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, covr |
| Linking To | |
| Enhances | |
| Depends On Me | multistateQTL |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | QTLExperiment_1.5.0.tar.gz |
| Windows Binary (x86_64) | QTLExperiment_1.5.0.zip |
| macOS Binary (x86_64) | QTLExperiment_1.5.0.tgz |
| macOS Binary (arm64) | QTLExperiment_1.5.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/QTLExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/QTLExperiment |
| Bioc Package Browser | https://code.bioconductor.org/browse/QTLExperiment/ |
| Package Short Url | https://bioconductor.org/packages/QTLExperiment/ |
| Package Downloads Report | Download Stats |